Current and selected bibliographies on benthic biology – 2012

Hydrological and Sedimentology Methods

Akhurst, D.; Clark, M.W.; Reichelt-Brushett, A.; Jones, G.B. 2011. Grain sixe normalization: a case for post extraction normalization and inclusion of selective extraction procedures. Limnol. Ocean. 9:215-231.

Methods and Techniques.

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Alvarez-Vázquez, L.J.; García-Chan, N.; Martínez, A.; Vázquez-Méndez, M.E. 2011. SOS: A numerical simulation toolbox for decision support related to wastewater discharges and their environmental impact. Environ. Model. Soft. 26(4):543-545

Alvisi, S.; Franchini, M. 2011. Fuzzy neural networks for water level and discharge forecasting with uncertainty. Environ. Model. Soft. 26(4):523-537.

Asadi-Aghbolaghi, M.; Rakhshandehroo, G.; Kompani-Zare, M. Analytical solutions for the capture zone of a pumping well near a stream. Hydrogeol. J. 19(6):1161-1168.

Banzhaf, S.; Krein, A.; Scheytt, T. 2011. Investigative approaches to determine exchange processes in the hyporheic zone of a low permeability riverbank. Hydrogeol. J. 19(3):591-601.

Baptista, P.; Cunha, T.; Matias, A.; Gama, C.; Bernardes, C.; Ferreira, Ó. 2011. New land-based method for surveying sandy shores and extracting DEMs: The INSHORE system. Environ. Monit. Assess. 182(1-4):243-257.

Belmar, O.; Velasco, J.; Martinez-Capel, F. Hydrological classification of natural flow regimes to support environmental flow assessments in intensively regulated Mediterranean rivers, Segura River basin (Spain). Environ. Manag. 47(5):992-1004.

Beskow, S.; Mello, C.R.; Norton, L.D.; da Silva, A.M. 2011. Performance of a distributed semi-conceptual hydrological model under tropical watershed conditions. Catena 86(3):160-171.

Brus, D.J.; Kempen, B.; Heuvelink, G.B.M. 2011. Sampling for validation of digital soil maps. Eur. J. Soil. Sci. 62(3):394-407.

Cardona, C.M.; Martin, C.; Salterain, A.; Castro, A.; San Martín, D.; Ayesa E. 2011. CALHIDRA 3.0 – new software application for river water quality prediction based on RWQM1. Environ. Model. Soft. 26(7):973-979.

Chen, H.; Stubbins, A.; Hatcher, P.G. 2011. A mini-electrodialysis system for desalting small volume saline samples for Fourier transform ion cyclotron resonance mass spectrometry. Limnol. Ocean. 9:582-592.

Chen, H.; Wood, M.D.; Linstead, C.; Maltby, E. 2011. Uncertainty analysis in a GIS-based multi-criteria analysis tool for river catchment management. Environmental Modelling and Software. 26(4):395-405.

Cho, H.; Slatton, K.C.; Cheung, S.; Hwang, S. 2011. Stream detection for LiDAR digital elevation models from a forested area. Int. J. Remote Sens. 32(16):4695-4721.

Cooper, K.; Ware, S.; Vanstaen, K.; Barry, J. 2011. Gravel seeding – A suitable technique for restoring the seabed following marine aggregate dredging? Estuar. Coast Shelf. Sci. 2011; 91(1):121-132.

Crabit, A.; Colin, F.; Moussa, R. 2011. A soft hydrological monitoring approach for comparing runoff on a network of small poorly gauged catchments. Hydrol. Process. 25(18):2785-2800.

Eng, K.; Kiang, J.E.; Chen, Y.; Carlisle, D.M.; Granato, G.E. 2011. Causes of systematic over‐ or underestimation of low streamflows by use of index ‐streamgage approaches in the united states. Hydrol. Process. 25(14):2211-2220.

Foppen, J.W.; Orup, C.; Adell, R.; Poulalion, V.; Uhlenbrook, S. 2011. Using multiple artificial DNA tracers in hydrology. Hydrol. Process. 25(19):3101-3106.

Foster, I.; Collins, A.; Naden, P.; Sear, D.; Jones, J.; Zhang, Y. 2011. The potential for paleolimnology to determine historic sediment delivery to rivers. J. Paleolimnol. 45(2):287-306.

Freitas, R.; Ricardo, F.; Pereira, F.; et al. 2011. Benthic habitat mapping: Concerns using a combined approach (acoustic, sediment and biological data). Estuar. Coast. Shelf. Sci. 92(4):598-606.

Hettler, E.N.; Gulliver, J.S.; Kayhanian, M. 2011. An elutriation device to measure particle settling velocity in urban runoff. Sci. Total Environ. 409(24):5444-5453.

Holtappels, M.; Lorke, A. 2011. Estimating turbulent diffusion in a benthic boundary layer. Limnol. Ocean. 9:29-41.

Methods and Techniques.

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Hwang, S.I.; Yun, E.Y.; Ro, H.M. 2011. Estimation of soil water retention function based on asymmetry between particle and pore size distributions. Eur. J. Soil. Sci. 62(2):195-205.

Inoue, T.; Glud, R.N.; Stahl, H.; Hume, A. 2011. Comparison of three different methods for assessing in situ friction velocity: A case study from Loch Etive, Scotland. Limnol. Ocean. 9:275-287.

Kannel, P.; Kanel, S.; Lee, S.; Lee, Y.; Gan T. 2011. A review of public domain water quality models for simulating dissolved oxygen in rivers and streams. Environ. Model. Assess. 16(2):183-204.

Koopmans, D.; Berg, P. 2011. An alternative to traditional seepage meters: Dye displacement. Water Resources Res. 47:W01506

Korbel, K.; Hose, G. 2011. A tiered framework for assessing groundwater ecosystem health. Hydrobiologia 661(1):329-349.

Lewandowski, J.; Angermann, L.; Nützmann, G.; Fleckenstein, J.H. 2011. A heat pulse technique for the determination of small ‐scale flow directions and flow velocities in the streambed of sand ‐bed streams. Hydrol. Process. 25(20):3244-3255.

Li, S.; Duffy, C.J. 2011. Fully coupled approach to modelling shallow water flow, sediment transport, and bed evolution in rivers. Water Res. Res. 47(3):W0305.

Li, S.; Lobb, D.A,; Kachanoski, R.G.; McConkey, B.G. 2011. Comparing the use of the traditional and repeated-sampling-approach of the 137Cs technique in soil erosion estimation. Geoderma 160(3-4):324-335.

Lu, S.; Ren, T.; Yu, Z.; Horton, R. 2011. A method to estimate the water vapour enhancement factor in soil. Eur. J. Soil. Sci. 62(4):498-504.

Macumber, A.; Patterson, R.; Neville, L.; Falck, H. 2011. A sledge microtome for high resolution subsampling of freeze cores. J. Paleolimnol. 45(2):307-310.

Madsen, A.T.; Murray, A.S.; Jain, M.; Andersen, T.J.; Pejrup, M. 2011. A new method for measuring bioturbation rates in sandy tidal flat sediments based on luminescence dating. Estuar. Coast Shelf. Sci. 92(3):464-471.

Maia, P.H.P.; Cruz, M.J.M. 2011. A New Method for Evaluating the Vulnerability of Aquifers. Braz. J. Fish. Aquat. Sci. Technol. 15(2): 29-40.

Mason, J.A.; Greene, R.S.B.; Joeckel, R.M. 2011. Laser diffraction analysis of the disintegration of aeolian sedimentary aggregates in water. Catena 87(1):107-118.

Matsui, G.Y.; Volkenborn, N.; Polerecky, L.; Henne, U.; et al. 2011. Mechanical imitation of bidirectional bioadvection in aquatic sediments. Limnol. Ocean. 9:84-96.

McGraw, D.; Pohll, G.; Schumer, R.; Shanafield, M. 2011. Development of tools to estimate conveyance losses in the Truckee River, USA. Hydrogeol. J. 19(2):329-338.

Meile, T.; Boillat, JL.; Schleiss A. 2011. Hydropeaking indicators for characterization of the upper-Rhone River in Switzerland. Aquat. Sci. 73(1):171-182.

Miller, R.L.; Buonassissi, C.; Del Castillo, C.E.; Beltz, M. 2011. A portable fiber optic system for measuring particle absorption using the quantified filter technique (QTF). Limnol. Ocean. 9:554-564.

Mount, N.J.; Abrahart, R.J. 2011. Load or concentration, logged or unlogged? addressing ten years of uncertainty in neural network suspended sediment prediction. Hydrol. Process. 25(20):3144-3157.

Nagare, R.M.; Schincariol, R.A.; Quinton, W.L.; Hayashi, M. 2011. Laboratory calibration of time domain reflectometry to determine moisture content in undisturbed peat samples. Eur. J. Soil. Sci. 62(4):505-515.

Nelson, M.A.; Bishop, T.F.A.; Triantafilis, J.; Odeh, I.O.A. 2011. An error budget for different sources of error in digital soil mapping. Eur. J. Soil. Sci. 62(3):417-430.

Methods and Techniques.

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Partington, D.; Brunner, P.; Simmons, C.T.; et al. 2011. A hydraulic mixing-cell method to quantify the groundwater component of streamflow within spatially distributed fully integrated surface water–groundwater flow models. Environ. Model. Soft. 26(7):886-898.

Peake, P.; Fitzsimons, J.; Frood, D.; et al. 2011. A new approach to determining environmental flow requirements: Sustaining the natural values of floodplains of the southern Murray-Darling basin. Ecol. Manag. Restor. 12(2):128-137.

Pierson, D.C.; Weyhenmeyer, G.A.; Arvola, L.; Bensen, B.; et al. 2011. An automated method to monitor lake ice phenology. Limnol. Ocean. 9:74-83.

Poggio, L.; Soille, P. 2011. A probabilistic approach to river network detection in digital elevation models. Catena 87(3):341-350.

Raven, E.K.; Ferguson, R.; Lane, S.N. 2011. A coupled sediment routing and lateral migration model for gravel ‐bed rivers. Hydrol. Process. 25(12):1887-1898.

Read, J.S.; Shade, A.; Wu, C.H.; Gorzalski, A.; McMahon, K.D. 2011. Gradual Entrainment Lake Inverter (GELI): A novel device for the experimental lake mixing. 9:14-28.

Renberg, I.; Hansson, H. 2011. A tripod piston corer for taking a meter-long sediment core with an undisturbed sediment–water interface. J. Paleolimnol. 46(2):313-317.

Reusser, D.E.; Zehe, E. 2011. Low‐cost monitoring of snow height and thermal properties with inexpensive temperature sensors. Hydrol. Process. 25(12):1841-1852.

Rouillard, A.; Rosén, P.; Douglas, M.; Pienitz, R.; Smol, J. 2011. A model for inferring dissolved organic carbon (DOC) in lakewater from visible-near-infrared spectroscopy (VNIRS) measures in lake sediment. J. Paleolimnol. 46(2):187-202.

Shanafield, M.; Hatch, C.; Pohll, G. 2011. Uncertainty in thermal time series analysis estimates of streambed water flux. Water Resource Res. 47:W03594.

Sudheer, K.P.; Lakshmi, G.; Chaubey, I. 2011. Application of a pseudo simulator to evaluate the sensitivity of parameters in complex watershed models. Environ. Model. Soft. 26(2):135-143.

Sulis, A.; Buscarinu, P.; Sechi, G.M. 2011. Using reservoir trophic-state indexes in optimisation modelling of water-resource systems. Environ. Model. Soft. 26(6):731-738.

Tatzber, M.; Mutsch, F.; Mentler, A.; et al. 2011. Mid-infrared spectroscopy for topsoil layer identification according to litter type and decompositional stage demonstrated on a large sample set of Austrian forest soils. Geoderma 166(1):162-170.

Telford, R.; Birks, H. 2011. Effect of uneven sampling along an environmental gradient on transfer-function performance. J. Paleolimnol. 46(1):99-106.

Termini, D. 2011. Bed scouring downstream of hydraulic structures under steady flow conditions: Experimental analysis of space and time scales and implications for mathematical modeling. Catena 84(3):125-135.

Tesfa, T.K.; Tarboton, D.G.; Watson, D.W.; Schreuders, K.A.T.; Baker, M.E.; Wallace, R.M. 2011. Extraction of hydrological proximity measures from DEMs using parallel processing. Environ. Model. Soft. 26(12):1696-1709.

Tian, J.; Nelson, D.; Hu, F. 2011. How well do sediment indicators record past climate? an evaluation using annually laminated sediments. J. Paleolimnol. 45(1):73-84.

Tuser, M.; Balk, H.; Mrkvicka, T.; Frouzova, J.; et al. 2011. Validation of current acoustic dead-zone estimation methods in lakes with strongly sloped bottoms. Limnol. Ocean. 9:507-514.

Wang, W.; Kravchenko, A.N.; Smucker, A.J.M.; Rivers, M.L. 2011. Comparison of image segmentation methods in simulated 2D and 3D microtomographic images of soil aggregates. Geoderma 162(3-4):231-241.

Methods and Techniques.

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Webster, K.L.; Creed, I.F.; Beall, F.D.; Bourbonnière, R.A. 2011. A topographic template for estimating soil carbon pools in forested catchments. Geoderma 160(3-4):457-467.

Wu, H.; Kimball, J.S.; Mantua, N.; Stanford, J. 2011. Automated upscaling of river networks for macroscale hydrological modeling. Water Res. Res. 47(3).

Zhu, Y.; Weindorf, D.C.; Zhang, W. 2011. Characterizing soils using a portable X-ray fluorescence spectrometer: 1. soil texture. Geoderma 167-168:167-177.
Remote Sensing and Telemetry Methods

Allan, M.G.; Hamilton, D.P.; Hicks, B.J.; Brabyn, L. 2011. Landsat remote sensing of chlorophyll a concentrations in central north island lakes of New Zealand. Int. J. Remote. Sens. 32(7):2037-2055.

Barillé, L.; Mouget, J.; Méléder, V.; Rosa, P.; Jesus, B. 2011. Spectral response of benthic diatoms with different sediment backgrounds. Remote Sens. Environ. 115(4):1034-1042.

Biancamaria, S.; Durand, M.; Andreadis, K.M.; et al. 2011. Assimilation of virtual wide swath altimetry

Bresciani, M.; Stroppiana, D.; Odermatt, D.; Morabito, G.; Giardino, C. 2011. Assessing remotely sensed chlorophyll-a for the implementation of the water framework directive in European perialpine lakes. Sci. Total Environ. 409(17):3083-3091.

Brewin, R.J.W.; Hardman-Mountford, N.J.; Lavender, S.J.; et al. 2011. An intercomparison of bio-optical techniques for detecting dominant phytoplankton size class from satellite remote sensing. Remote Sens. Environ. 115(2):325-339.

Brown, C.J.; Smith, S.J.; Lawton, P.; Anderson, J.T. 2011. Benthic habitat mapping: A review of progress towards improved understanding of the spatial ecology of the seafloor using acoustic techniques. Estuar. Coast. Shelf Sci. 92(3):502-520.

Casenave, F.; Zhang, Y.; McPhee-Shaw, E.; Bellingham, J.G.; Stanton, T.P. 2011. High resolution surveys of internal tidal waves in Montery Bay, California, using an autonomous underwater vehicle. Limnol. Ocean. 9:571-581.

Chen, F.; Guan, Z.; Yang, X.; Cui, W. 2011. A novel remote sensing image fusion method based on independent component analysis. Int. J. Remote Sens. 32(10):2745-2763.

Dash, P.; Walker, N.D.; Mishra, D.R.; Hu, C.; Pinckney, J.L.; D’Sa E.J. 2011. Estimation of cyanobacterial pigments in a freshwater lake using OCM satellite data. Remote Sens. Environ. 115(12):3409-3423.

Espinoza, M.; Farrugia, T.J.; Webber, D.M.; Smith, F.; Lowe, C.G. 2011. Testing a new acoustic telemetry technique to quantify long-term, fine-scale movements of aquatic animals. Fish. Res. 108(2-3):364-371.

Fan, Y.; Zhu, Q.; Aller, R.; Rhoads, D. 2011. An in situ multispectral imaging system for planar optodes in sediments: Examples of high-resolution seasonal patterns of pH. Aquat. Geochem. 17(4-5):457-471.

Garbulsky, MF.; Peñuelas, J.; Gamon, J.; Inoue, Y.; Filella, I. 2011. The photochemical reflectance index (PRI) and the remote sensing of leaf, canopy and ecosystem radiation use efficiencies. Remote Sens. Environ. 115(2):281-297.

Goerndt, M.E.; Monleon, V.J.; Temesgen, H. 2011. A comparison of small-area estimation techniques to estimate selected stand attributes using LiDAR-derived auxiliary variables. Can. J. For. Res. 41(6):1189-1201.

Gómez, J.; Alonso, C.; García, A. 2011. Remote sensing as a tool for monitoring water quality parameters for Mediterranean lakes of European union water framework directive (WFD) and as a system of surveillance of cyanobacterial harmful algae blooms (SCyanoHABs). Environ. Monit. Assess. 181(1-4):317-334.

Methods and Techniques.

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Guerra-Castro, E.; Carmona-Suárez, C.; Conde, J. 2011. Biotelemetry of crustacean decapods: Sampling design, statistical analysis, and interpretation of data. Hydrobiologia 678(1):1-15.

Jakobsen, H.H.; Cartensen, J. 2011. FlowCAM: Sizing cells and understanding the impact of size distributions on biovolume of planktonic community structure. Mar. Ecol. Prog. Series.65(1):75- 87.

Jing, L.; Cheng, Q. 2011. An image fusion method for misaligned panchromatic and multispectral data. Int. J. Remote Sens. 32(4):1125-1137.

Kovacs, J.; Liu, Y.; Zhang, C.; Flores-Verdugo, F.; Santiago, F. 2011. A field based statistical approach for validating a remotely sensed mangrove forest classification scheme. Wetlands Ecol. Manage. 19(5):409-421.

Laws, E.A.; D'sa, E.; Naik, P. 2011. Simple equations to estimate ratios of new or export production to total production from satellite-derived estimates of sea-surface temperature and primary production. 9:593-601.

Le, C.; Li, Y.; Zha, Y.; Sun, D.; Huang, C.; Zhang, H. 2011. Remote estimation of chlorophyll a in optically complex waters based on optical classification. Remote Sens. Environ. 115(2):725-737.

Lemmetyinen, J.; Kontu, A.; Kärnä, J.; Vehviläinen, J.; Takala, M.; Pulliainen, J. 2011. Correcting for the influence of frozen lakes in satellite microwave radiometer observations through application of a microwave emission model. Remote Sens. Environ. 115(12):3695-3706.

Lhermitte, S.; Verbesselt, J.; Verstraeten, W.W.; Coppin, P. 2011. A comparison of time series similarity measures for classification and change detection of ecosystem dynamics. Remote Sens. Environ. 115(12):3129-3152.

Liu, F.; Chen, C.; Tang, S.; Liu, D. 2011. Retrieval of chlorophyll a concentration from a fluorescence enveloped area using hyperspectral data. Int. J. Remote Sens. 32(13):3611-3623.

Ma, W.; Xing, Q.; Chen, C.; Zhang, Y.; Yu, D.; Shi, P. 2011. Using the normalized peak area of remote sensing reflectance in the near-infrared region to estimate total suspended matter. Int. J. Remote. Sens. 32(22):7479-7486.

Matthews, M.W. 2011. A current review of empirical procedures of remote sensing in inland and near-coastal transitional waters. Int. J. Remote Sens. 32(21):6855-6899.

McKinna, L.I.W.; Furnas, M.J.; Ridd, P.V. 2011. A simple binary classification algorithm for the detection of Trichodesmium spp. within the Great Barrier Reef using MODIS imagery. Limnol. Ocean. 9:50-66.

Mills, P. Efficient statistical classification of satellite measurements. Int J Remote Sens. 2011; 32(21):6109-6132.

Mongus, D.; Žalik, B. 2011. Efficient method for lossless LIDAR data compression. Int. J. Remote Sens. 32(9):2507-2518.

Mulder, V.L,; de Bruin, S.; Schaepman, M.E.; Mayr, T.R. 2011. The use of remote sensing in soil and terrain mapping — A review. Geoderma 162(1-2):1-19.

Namdar Ghanbari, R.; Bravo, H. 2011. Evaluation of correlations between precipitation, groundwater fluctuations, and lake level fluctuations using spectral methods (Wisconsin, USA). Hydrogeol. J. 19(4):801-810.

Nagler, P. 2011. The role of remote sensing observations and models in hydrology: The science of evapotranspiration. Hydrol. Process. 25(26):3977-3978.

Newman, M.E.; McLaren, K.P.; Wilson, B.S. 2011. Comparing the effects of classification techniques on landscape-level assessments: Pixel-based versus object-based classification. Int. J. Remote Sens. 32(14):4055-4073.

Methods and Techniques.

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Novoa, S.; Chust, G.; Valencia, V.; Froidefond, J.; Morichon, D. 2011. Estimation of chlorophyll-a concentration in waters over the continental shelf of the Bay of Biscay: A comparison of remote sensing algorithms. Int. J. Remote Sens. 32(23):8349-8371.

Orell, P.; Erkinaro, J.; Karppinen, P. 2011.. Accuracy of snorkelling counts in assessing spawning stock of Atlantic salmon, Salmo salar, verified by radio-tagging and underwater video monitoring. Fish Manage Ecol. 18(5):392-399.

Pal, M. 2011. Modified nearest neighbour classifier for hyperspectral data classification. Int. J. Remote Sens. 32(24):9207-9217.

Paul, M.; Lefebvre, A.; Manca, E.; Amos, C.L. 2011. An acoustic method for the remote measurement of seagrass metrics. Estuar. Coast. Shelf Sci. 93(1):68-79.

Pike, T. 2011. Using digital cameras to investigate animal colouration: Estimating sensor sensitivity functions. Behav. Ecol. Sociobiol. 65(4):849-858.

Qian, S.; Lévesque, J.; Rashidi Far, R. 2011. Assessment of noise reduction of hyperspectral imagery using a target detection application. Int. J. Remote Sens. 32(12):3267-3284.

Raitsos, D.E.; Lavender, S.J.; Maravelias, C.D.; et al. 2011. Macroscale factors affecting diatom abundance: A synergistic use of continuous plankton recorder and satellite remote sensing data. Int. J. Remote. Sens. 32(8):2081-2094.

Read, J.S.; Hamilton, D.P.; Jones, I.D.; et al. 2011. Derivation of lake mixing and stratification indices from high-resolution lake buoy data. Environ. Model. Soft. 26(11):1325-1336.

Rouwet, D. 2011. A photographic method for detailing the morphology of the floor of a dynamic crater lake: The El Chichón case (Chiapas, Mexico). Limnology 12(3):225-233.

Siddique-E-Akbor, A.H.M.; Hossain, F.; Lee, H.; Shum, C.K. 2011. Inter-comparison study of water level estimates derived from hydrodynamic–hydrologic model and satellite altimetry for a complex deltaic environment. Remote Sens. Environ. 115(6):1522-1531.

Sun, D.; Li, Y.; Wang, Q.; Le, C.; Huang, C.; Shi, K. 2011. Development of optical criteria to discriminate various types of highly turbid lake waters. Hydrobiologia 669(1):83-104.

Sun, J.; Mao, S. 2011. River detection algorithm in SAR images based on edge extraction and ridge tracing techniques. Int. J. Remote Sens. 32(12):3485-3494.

Teodoro, A.; Pais-Barbosa, J.; Gonçalves, H.; Veloso-Gomes, F.; Taveira-Pinto, F. 2011. Identification of beach hydromorphological patterns/forms through image classification techniques applied to remotely sensed data. Int. J. Remote Sens. 32(22):7399-7422.

Tiwari, S.P.; Shanmugam, P. 2011. An optical model for the remote sensing of coloured dissolved organic matter in coastal/ocean waters. Estuar. Coast Shelf. Sci. 93(4):396-402.

Trenkel, V.M.; Ressler, P.H.; Jech, M.; Giannoulaki, M.; Taylor, C. 2011. Underweater acoustics for ecosystem-based management: state of the science and proposals for ecosystem indicators. Mar. Ecol. Prog. Ser. 442: 285-301.

van der Kooij, J.; Kupschus, S.; Scott, B.E. 2011. Delineating the habitat of demersal fish assemblages with acoustic seabed technologies. ICES. J. Mar. Sci. 68(9):1973-1985.

van Rein, H.; Brown, C.J.; Quinn, R.; Breen, J.; Schoeman, D. 2011. An evaluation of acoustic seabed classification techniques for marine biotope monitoring over broad-scales (>1 km2) and meso-scales (10 m2–1 km2). Estuar. Coast Shelf. Sci. 93(4):336-349.

Volpe, V.; Silvestri, S.; Marani, M. 2011. Remote sensing retrieval of suspended sediment concentration in shallow waters. Remote Sens. Environ. 115(1):44-54.

Wang, S. 2011. Effective reconstructed methods of the CL multiwavelet for remote sensing images. Int. J. Remote Sens. 32(1):125-132.

Methods and Techniques.

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Zhang, Y.; Gao, J.; Gu, Y. 2011. A simple method for mapping bathymetry over turbid coastal waters from MODIS data: Possibilities and limitations. Int. J. Remote Sens. 32(22):7575-7590.

Zion, B.; Barki, A.; Grinshpon, J.; Rosenfeld, L.; Karplus, I. 2011. An automatic fishing machine based on acoustic conditioning. Aquacult. Eng. 45(2):87-91.

Methods in Aquatic and Environmental Microbiology

Aguilera, P.; Borie, F.; Seguel, A.; Cornejo, P. 2011. Fluorescence detection of aluminum in arbuscular mycorrhizal fungal structures and glomalin using confocal laser scanning microscopy. Soil. Biol. Biochem. 43(12):2427-2431.

Atanasova, N.; Džeroski, S.; Kompare, B.; Todorovski, L.; Gal, G. Automated discovery of a model for dinoflagellate dynamics. Environ. Model. Software 2011; 26(5):658-668.

Bowles, M.W.; Samarkin, V.A.; Joye, S.B. 2011. Improved measurement of microbial activity in deep-sea sediments at in situ pressure and methane concentration. Limnol. Ocean. 9:499-506.

Brum, J.R.; Steward, G.f. 2011. Physical fractionation of aquatic viral assemblages. Limnol. Ocean. 9:150-163.

Castillo-Medina, R.E.; Arzapola-Castaneda, G.; Villanueva, M.A. 2011. Making walled-, highly autofluorescent dinoflagellate algae cells accessible and amendable for immunofluorescence and application of fluorescent probes. Limnol. Ocean. 9:460-465.

Chang, C.; Lee, C.; Wu, C.; Cheng, T.C.; Tsai, J,; Lin, K. 2011. A selective and differential medium for Vibrio alginolyticus. J. Fish. Dis. 34(3):227-234.

Christaki, U.; Courties, C.; Massana, R.; Catala, P.; et al. 2011. Optimized routine flow cytometric enumeration of heterotrophic flagellates using SYBR Green I. Limnol. Ocean. 9:329-339.

DeAngelis, K.M.; Wu, C.H.; Beiler, H.R; et al. 2011. PCR amplification-independent methods for detection of microbial communities but he high-density microarray PhyloChip. Appl. Environ. Microbiol. 77: 6313-5322

Dohnalkova, A.C.; Marshall, M.J.; Arey, B.W.; et al.; 2011. Imaging hydrated microbial extracellular polymers: comparative analysis by electron microscopy. Appl. Environ. Microbiol. 77: 1254-1262.

Dziallis, C.; Pinnow, S.; Grossart, H. 2011. Quantification of toxic and toxin-producing cyanobacterial celles by RING-FISH in combination with flow cytometry. Limnol. Ocean. 9:67-73.

Emmenegger, E.J.; Kentop, E.; Thompson, T.M.; et al. 2011. Development of an aquatic pathogen database (AquaPathogen X) and its utilization in tracking emerging fish virus pathogens in North America. J. Fish. Dis. 34(8):579-587.

Frostegård, Å.; Tunlid, A.; Bååth, E. 2011. Use and misuse of PLFA measurements in soils. Soil. Biol. Biochem. 43(8):1621-1625.

Fujinoki, M.; Koito, T.; Fujiwara, Y.; Kawato, M.; et al. 2012. Whole-mount fluorescence in situ hybridization to visualize symbiotic bacteria in the gills of deep sea mussels. Aqua. Biol. 14(2): 135-140.

Holmsgaard, P.N.; Norman, A.; Hede, S.C.; et al. 2011. Bias in bacterial diversity as a result of nycodenz extraction from bulk soil. Soil Biol. Biochem. 43(10):2152-2159.

Joergensen, R.G.; Wu, J.; Brookes, P.C. 2011. Measuring soil microbial biomass using an automated procedure. Soil Biol. Biochem. 43(5):873-876.

Jogler, M.; Siemens, H.; Chen, H.; et al. 2011 Identification and targeted cultivation of abundant novel freshwater Sphingomonads and analysis of their population substructure. Appl. Environ. Microbiol. 77: 7355-7364.