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3.2. Биоинформатика самый последн вариант2

Интернет ресурслари

  1. http://www.jcbi.ru/ – Объединенный Центр вычислительной биологии и биоинформатики, русскоязычный информационный сайт с вэб-адресами и краткой характеристикой молекулярно-биологических баз данных

  2. http://beta.uniprot.org/ SWISS-PROT|UniProt the protein sequence data bank, база данных UniProt

  3. http://www.ebi.ac.uk/uniprot/ база данных UniProt на сервере Европейского института биоинформатики (European Bioinformatics Institute, EBI)

  4. http://www.expasy.org/sprot/ базы данных Swiss-Prot, TrEmbl, UniProt на сервере ExPASy (Expert Protein Analysis System) Швейцарского Института Биоинформатики SIB

  5. http://www.rcsb.org/ – Protein Data Bank, база данных PDB.

  6. http://www.ncbi.nlm.nih.gov/ (http://www.pubmed.com/)сервер Национального центра биотехнологической информации США (NCBI): базы данных GenBank, NCBI Protein Database, UniGene, HomoloGene и др.

  7. http://cmm.info.nih.gov/modeling/сервер Центра моделирования молекул Национального Института Здоровья NIH, США

  8. http://www.genebio.com/ сайт компании GeneBio (Geneva Bioinformatics S.A.), распространяющей информацию из протеомных баз данных: SWISS-PROT, PROSITE, SWISS-2DPAGE и соответствующие программные приложения

  9. http://www.genebee.msu.su/ регулярно обновляемая копия (зеркало) базы компании GeneBio в России, на сайте Института физико-химической биологии им. А.Н. Белозерского

  10. http://molbiol.ru/ – Классическая и молекулярная биология

  11. http://molbiol. edu.ru/ – Практическая молекулярная биология

  12. http://proteome.ru/ – русскоязычный сайт проекта “Протеом человека”

1 Леск А.М. Введение в биоинформатику /Introduction to Bioinformatics / пер. с англ. под ред. А.А.Миронова, В. К. Швядаса. - М.: БИНОМ. Лаб. знаний, 2009. - 318

1 Леск А.М. Введение в биоинформатику /Introduction to Bioinformatics / пер. с англ. под ред. А.А.Миронова, В. К. Швядаса. - М.: БИНОМ. Лаб. знаний, 2009. - 318

2 Сетубал Ж., Мейданис Ж. Введение в вычислительную молекулярную биологию / Introduction to Computational Molecular Biology / пер. с англ. А. А. Чумичкина; под ред. А. А. Миронова. - М. ; Ижевск : Регуляр. и хаот. динамика: НИЦ "Регулярная и хаотическая динамика", Ин-т компьютер. исслед., 2007. - 420 с.

1 David W. Mount, Bioinformatics: Sequence and Genome Analysis, Cold Spring Harbor Laboratory Press, 2001

1 David W. Mount, Bioinformatics: Sequence and Genome Analysis, Cold Spring Harbor Laboratory Press, 2001

1 Xiong Z.J. // Essential Bioinformatics, Cambridge University Press 2006, 362 p.

2 Claverie D.J.-M., Notredame C. // Bioinformatics for Dummies, For Dummies 2006, 456 pages.

1 Кузнецов П.Е., Грибов Л.А. Введение в молекулярное моделирование. Учебное пособие. - Саратов: Изд-во СГУ. – 2003.

1 Marketa Zvelebil, Jeremy O. Baum // Understanding Bioinformatics, Garland Science 2007. 798 pages

1 Plessis L, Skunca N, Dessimoz C (November 2011). «The what, where, how and why of gene ontology — a primer for bioinformaticians». Brief Bioinform. 12 (6): 723–35.DOI: 10.1093/bib/bbr002. PMID 21330331.

1 Smith B, Ashburner M, Rosse C, Bard J, Bug W, Ceusters W, Goldberg LJ, Eilbeck K, Ireland A, Mungall CJ, Leontis N, Rocca-Serra P, Ruttenberg A, Sansone SA, Scheuermann RH, Shah N, Whetzel PL, Lewis S (November 2007). «The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration». Nat. Biotechnol. 25 (11): 1251–5.DOI:10.1038/nbt1346. PMID 17989687.

1 Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G (May 2000). «Gene ontology: tool for the unification of biology. The Gene Ontology Consortium». Nat. Genet. 25 (1): 25–9. DOI:10.1038/75556.PMID 10802651.

1 Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G (May 2000). «Gene ontology: tool for the unification of biology. The Gene Ontology Consortium». Nat. Genet. 25 (1): 25–9. DOI:10.1038/75556.PMID 10802651.

2 The Gene Ontology Consortium (January 2012). «The Gene Ontology: enhancements for 2011.». Nucleic Acids Res. 40 (Database issue): D559–64. DOI:10.1093/nar/gkr1028. PMID 22102568.

1 The Gene Ontology Consortium (January 2013). «Gene Ontology annotations and resources.». Nucleic Acids Res. 41 (Database issue): D530–5. DOI:10.1093/nar/gks1050. PMID 

1 Capecchi MR. // Gene targeting in mice: functional analysis of the mammalian genome for the twenty-first century. Nat Rev Genet. 2005 Jun;6(6):507-512.

2 Kim Y.G., Cha J., Chandrasegaran S. // Proc. Natl. Acad. Sci. USA. 1996. V. 93. № 3. P. 1156–1160.

3 Townsend JA1, Wright DA, Winfrey RJ, Fu F, Maeder ML, Joung JK, Voytas DF. // High-frequency modification of plant genes using engineered zinc-finger nucleases. // Nature. 2009 May 21;459(7245):442-5. doi: 10.1038/nature07845. Epub 2009 Apr 29.

1 Townsend JA1, Wright DA, Winfrey RJ, Fu F, Maeder ML, Joung JK, Voytas DF. // High-frequency modification of plant genes using engineered zinc-finger nucleases. // Nature. 2009 May 21;459(7245):442-5. doi: 10.1038/nature07845. Epub 2009 Apr 29.

2 Zhang F1, Maeder ML, Unger-Wallace E, Hoshaw JP, Reyon D, Christian M, Li X, Pierick CJ, Dobbs D, Peterson T, Joung JK, Voytas DF. // High frequency targeted mutagenesis in Arabidopsis thaliana using zinc finger nucleases.// Proc Natl Acad Sci U S A. 2010 Jun 29;107(26):12028-33. doi: 10.1073/pnas.0914991107. Epub 2010 May 27.

3 Jianbin Wang, Joshua J. DeClercq, Samuel B. Hayward, Patrick Wai-Lun Li, David A. Shivak, Philip D. Gregory, Gary Lee, and Michael C. Holmes // Highly efficient homology-driven genome editing in human T cells by combining zinc-finger nuclease mRNA and AAV6 donor delivery // Nucleic Acids Res. 2016 Feb 18; 44(3): e30.

4 Wang J, Friedman G, Doyon Y, Wang NS, Li CJ, Miller JC, Hua KL, Yan JJ, Babiarz JE, Gregory PD, et al. Targeted gene addition to a predetermined site in the human genome using a ZFN-based nicking enzyme. // Genome Res. 2012 Jul; 22(7):1316-26. Epub 2012 Mar 20.

5 Keith Joung J. and Jeffry D. Sander // TALENs: a widely applicable technology for targeted genome editing // Nat Rev Mol Cell Biol. 2013 Jan; 14(1): 49–55.

1 Watanabe T, et al. Non-transgenic genome modifications in a hemimetabolous insect using zinc-finger and TAL effector nucleases. Nat Commun. 2012;3:1017.

2 Sander JD, et al. Targeted gene disruption in somatic zebrafish cells using engineered TALENs. Nat Biotechnol. 2011;29:697–698.

3 Huang P, et al. Heritable gene targeting in zebrafish using customized TALENs. Nat Biotechnol. 2011;29:699–700.

4 Bedell VM, et al. In vivo genome editing using a high-efficiency TALEN system. Nature. 2012

1 Lei Y, et al. Efficient targeted gene disruption in Xenopus embryos using engineered transcription activator-like effector nucleases (TALENs) Proc Natl Acad Sci U S A. 2012.

1 Cermak T, et al. Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting. Nucleic Acids Res. 2011;39:e82.

2 Li T, Liu B, Spalding MH, Weeks DP, Yang B. High-efficiency TALEN-based gene editing produces disease-resistant rice. Nat Biotechnol. 2012;30:390–392.

3 Wei Zhu et. al // CRISPR/Cas9 produces anti-hepatitis B virus effect in hepatoma cells and transgenic mouse. // Virus Research, 2016. 217, 125-132

1 Zhan-Qi Dong et. al // Establishment of a highly efficient virus-inducible CRISPR/Cas9 system in insect cells. // Antiviral Research, 2016. 130, 50-57

2 Lichun Tang et. al // In vitro CRISPR-Cas9-mediated efficient Ad5 vector modification. // Biochemical and Biophysical Research Communications, 2016. 474(2), 395-399.

1 Ma S, et al. Highly Efficient and Specific Genome Editing in Silkworm Using Custom TALENs. PLoS One. 2012;7:e45035.

2 Lei Y, et al. Efficient targeted gene disruption in Xenopus embryos using engineered transcription activator-like effector nucleases (TALENs) Proc Natl Acad Sci U S A. 2012

1 Cermak T, et al. Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting. Nucleic Acids Res. 2011;39:e82.

2 Sander JD, et al. Targeted gene disruption in somatic zebrafish cells using engineered TALENs. Nat Biotechnol. 2011;29:697–698.

1 Watanabe T, et al. Non-transgenic genome modifications in a hemimetabolous insect using zinc-finger and TAL effector nucleases. Nat Commun. 2012;3:1017.

2 Zhan-Qi Dong et. al // Establishment of a highly efficient virus-inducible CRISPR/Cas9 system in insect cells. // Antiviral Research, 2016. 130, 50-57.




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